wiki:AthenaDocsUGUserExpress

Version 10 (modified by jmstone, 4 years ago) (diff)

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User-defined Output Variables

Documentation/UserGuide/User Variables

New Variables added to .tab, .bin, .vtk, or image (.ppm or .pgm) outputs

Often it is useful to output a variable other than the pre-defined values accessed by the <output>/out parameter (see Output Blocks). For example, one might like to create ppm images of the current density, J=Curl(B). This can be easily accomplished using the <output>/usr_expr_flag parameter. The following steps are required.

  1. Write a function that computes the desired variable, and add it to the file that contains the

problem generator. The function must be of type Real, and the argument list must contain the GridS structure and the indices of the grid cell. (For details of the data contained in the GridS structure, see the Programmer's Guide.) The following example, taken from /athena/src/prob/field_loop.c, computes the z-component of the current density at cell i,j,k.

static Real current(const GridS *pG, const int i, const int j, const int k)
{  return ((pG->B2i[k][j][i]-pG->B2i[k][j][i-1])/pG->dx1 -
           (pG->B1i[k][j][i]-pG->B1i[k][j-1][i])/pG->dx2); 
}
  1. Use the function get_usr_expr() in the

problem generator file to set a pointer to this new function if the string in <output>/out has the appropriate value. As an example, the following code sets the output variable to be the current density computed using the function given above if the <output>/out string is J3

ConsFun_t get_usr_expr(const char *expr)
{
  if(strcmp(expr,"J3")==0) return current;
  return NULL;
}
  1. To create a movie of the current density, use an output block in the input

file in which <output>/out=J3, and <output>/usr_expr_flag=1, with the other valid parameters set as appropriate (to control, for example, the time interval between outputs, min/max scaling, etc.), for example

<output3>
out_fmt = ppm       # ppm image
out     = J3
id      = J3
usr_expr_flag = 1
palette = rainbow
dt      = 0.004     # time step between images
dmin    = -0.04     # min value for imaging J3
dmax    =  0.08     # max value for imaging J3

Alternatively, one could output the current density as floating-point numbers in vtk format using out_fmt=vtk, or as a formatted table using out_fmt=tab.

New Variables added to .hst dumps

It is also possible to add new volume-averaged quantities that are output as additional columns in history (.hst) dumps. To add a new, user-defined history variable, use the following steps.

  1. Write a function that computes the desired variable, and add it to the file that contains the

problem generator, identical to step 1 above for all other output types.

  1. Enroll this new function by adding a call to dump_history_enroll() anywhere in the problem generator. This function has two arguments,

the first is the name of the function created in step 1, the second is a string used as a header for the new column in the history file. For example, the following four lines of code in the problem generator enroll four new history variables.

  dump_history_enroll(hst_Bx, "<Bx>");
  dump_history_enroll(hst_By, "<By>");
  dump_history_enroll(hst_Bz, "<Bz>");
  dump_history_enroll(hst_BxBy, "<-Bx By>");

These variables are computed by the user-defined functions hst_Bx(), hst_By(), hst_Bz(), and hst_BxBy() respectively, and create new columns with headers <Bx>, <By>, <Bz>, and <-Bx By> respectively.